[ ]廉师友. 人工智能导论[M].北京:清华大学出版社,2020:4.
[ ]王彦雨,雍熙,高芳.人工智能的学科汇聚现象及其对科研范式的影响研究[J].社会科学战线,2024,(3):26-40.
[ ]新华社.科技部启动“人工智能驱动的科学研究”专项部署工作.[EB/OL].(2023-03-27)[2024-12-14]. https://www.gov.cn/xinwen/2023-03/27/content_5748495.htm.
[ ]李亚玲,包芊颖,黄成凤.人工智能驱动科研范式变革的机制与路径研究——以生物学为例[J].中国科技论坛,2024,(4):12-21.
[ ]Holzinger A,Keiblinger K,Holub P,et al. AI for life: Trends in artificial intelligence for biotechnology[J].New Biotechnology,2023,74: 16-24.
[ ]Hassoun S,Jefferson F,Shi X,et al.Artificial intelligence for biology[J].Integrative and Comparative Biology,2021,61(6):2267-2275.
[ ]李国杰.智能化科研(AI4R):第五科研范式[J].中国科学院院刊,2024,39(1):1-9.
[ ]鄂维南. AI助力打造科学研究新范式[J].中国科学院院刊,2024,39(1):10-16.
[ ]Wang H,Fu T,Du Y,et al.Scientific discovery in the age of artificial intelligence[J]. Nature,2023,620(7972):47-60.
[ ]王飞跃,缪青海.人工智能驱动的科学研究新范式:从AI4S到智能科学[J].中国科学院院刊,2023,38(04):536-540.
[ ]李建会,杨宁.AI for Science:科学研究范式的新革命[J].广东社会科学,2023,(6):81-92+289-290.
[ ]Lederberg J,Feigenbaum E A.Mechanization of inductive inference in organic chemistry[M]. California:Stanford University,1967:187.
[ ]NASA Technical Reports Server.DENDRAL-64-A system for computer construction, enumeration and notation of organic molecules as tree structures and cyclic graphs. Part II-Topology of cyclic graphs Interim report[R].Washington:NTRS,1965.
[ ]Shortliffe E H,Davis R,Axline S G,et al.Computer-based consultations in clinical therapeutics: explanation and rule acquisition capabilities of the MYCIN system[J].Computers and biomedical research, 1975, 8(4): 303-320.
[ ]Bilofsky H S,Burks C,Fickett J W,et al. The GenBank genetic sequence databank[J].Nucleic acids research,1986,14(1): 1-4.
[ ]Pearson P L.The genome data base (GDB)—a human gene mapping repository[J].Nucleic Acids Research,1991,19(suppl): 2237-2239.
[ ]Bank P D. Protein data bank[J]. Nature New Biol,1971,233: 223.
[ ]UniProt Consortium. UniProt:a worldwide hub of protein knowledge[J].Nucleic acids research, 2019,47(D1):D506-D515.
[ ]Gajda M J. hpdb–haskell library for processing atomic biomolecular structures in protein data bank format[J].BMC research notes,2013,6(483):1-7.
[ ]Stephens Z D,Lee S Y,Faghri F,et al. Big data: astronomical or genomical?[J].PLoS biology, 2015,13(7):e1002195.
[ ] He K Y,Ge D,He M M. Big data analytics for genomic medicine[J].International journal of molecular sciences,2017,18(2): 412.
[ ]刘翟,卜东波,石铁流等.生物芯概念计算——生物信息计算的新概念[J].中国科学:生命科学,2018,48(03):341-342.
[ ]周祯,闫超,张辰宇.人工智能生物学——生物学3.0[J].中国科学:生命科学,2022,52(03):291-300.
[ ]Camacho D M, Collins K M, Powers R K, et al. Next-generation machine learning for biological networks[J].Cell,2018,173(7): 1581-1592.
[ ]Yang Z R.Biological applications of support vector machines[J].Briefings in bioinformatics, 2004,5(4): 328-338.
[ ]Seixas F L, Zadrozny B, Laks J, et al. A Bayesian network decision model for supporting the diagnosis of dementia, Alzheimer? s disease and mild cognitive impairment[J]. Computers in biology and medicine, 2014, 51: 140-158.
[ ]Sonnhammer E L L, Von Heijne G, Krogh A. A hidden Markov model for predicting transmembrane helices in protein sequences,June28-July1,1998[C].Menlo Park: AAAI Press,1998.
[ ]Bickel PJ,Brown JB,Huang H,et al.An overview of recent developments in genomics and associated statistical methods[J]. Philos Trans A Math Phys Eng Sci. 2009,367(1906):4313-4337.
[ ]科技日报,陈润生院士:解析生物医学大数据,人工智能是最适用手段[EB/OL].(2024-10-15)[2024-12-06]. https://ad.cas.cn/mtbd2022/202410/t20241015_5036136.html.
[ ]Holzinger A, Keiblinger K, Holub P, et al. AI for life: Trends in artificial intelligence for biotechnology[J]. New Biotechnology,2023,74: 16-24.
[ ]李正风.AI for Science:认知的技术性替代进入新时代[J].世界科学,2024,(8):1.
[ ]Jumper J,Evans R,Pritzel A,et al.Highly accurate protein structure prediction with AlphaFold[J]. nature,2021,596(7873): 583-589.
[ ]Abramson J,Adler J,Dunger J,et al.Accurate structure prediction of biomolecular interactions with AlphaFold 3[J].Nature,2024,630(8016):493-500.
[ ]AlphaFold Protein Structure Database[EB/OL].(2024-12-20)[2024-12-20].https://alphafold.com.
[ ]Fontana P,Dong Y,Pi X,et al.Structure of cytoplasmic ring of nuclear pore complex by integrative cryo-EM and AlphaFold[J].Science,2022,376(6598):eabm9326.
[ ]Shan S,Luo S,Yang Z,et al. Deep learning guided optimization of human antibody against SARS-CoV-2 variants with broad neutralization[J]. Proceedings of the National Academy of Sciences,2022,119(11):e2122954119.
[ ]Kumar Y,Koul A,Singla R,et al. Artificial intelligence in disease diagnosis: a systematic literature review,synthesizing framework and future research agenda[J].Journal of ambient intelligence and humanized computing,2023,14(7):8459-8486.
[ ]Zhang K, Zhou R, Adhikarla E, et al. A generalist vision–language foundation model for diverse biomedical tasks[J].Nature Medicine,2024,30:3129-3141.
[ ]Yang X, Liu G, Feng G, et al. GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model[J]. Cell Research, 2024,34(12):830-845.
[ ] Moor M, Banerjee O, Abad Z S H, et al. Foundation models for generalist medical artificial intelligence[J].Nature,2023,616(7956): 259-265.
[ ]Wei J,Tay Y,Bommasani R,et al. Emergent abilities of large language models[J].arXiv preprint arXiv:2206.07682,2022.
[ ]Krenn M,Pollice R,Guo S Y,et al.On scientific understanding with artificial intelligence[J]. Nature Reviews Physics,2022,4(12):761-769.
[ ]马克思恩格斯全集(第23卷)[M]. 北京:人民出版社,1972:204.
[ ]Agrawal A, McHale J, Oettl A. Artificial intelligence and scientific discovery: A model of prioritized search[J]. Research Policy,2024,53(5): 104989.
[ ]Agrawal A,Gans J,Goldfarb A.Prediction Machines,Updated and Expanded: The Simple Economics of Artificial Intelligence[M].Cambridge:Harvard Business Press,2022.
[ ]Felin,Teppo & Holweg,Matthias.Theory Is All You Need: AI,Human Cognition,and Causal Reasoning[J]. Strategy Science, 2024:2333-2050.
[ ]伽里森. 实验如何终结[M]. 董丽丽,译. 上海:上海交通大学出版社,2006.
[ ]Bycroft C,Freeman C,Petkova D,et al.The UK Biobank resource with deep phenotyping and genomic data[J].Nature,2018,562(7726):203-209.
[ ]Merton R K.The Matthew effect in science:The reward and communication systems of science are considered[J].Science,1968,159(3810):56-63.
[ ]Wankowicz S, Beltrao P, Cravatt B. AlphaFold3 Transparency and Reproducibility[J]. Zenodo, 2024.
[ ]The White House. Supercharging Research: Harnessing Artificial Intelligence to Meet Global Challenges. Washington: The White House,2024.
[ ]Urbina F,Lentzos F,Invernizzi C,et al.Dual use of artificial-intelligence-powered drug discovery[J]. Nature machine intelligence,2022,4(3):189-191.
[ ]Weizenbaum J. On the impact of the computer on society: How does one insult a machine?[J]. Science,1972,176(4035): 609-614.
[ ]Stilgoe J. We need a Weizenbaum test for AI[J]. Science,2023,381(6658): eadk0176.
[ ]中国科学报. 董光壁:要把价值考虑纳入科学过程[R/OL].(2017-02-13)[2024-12-16].
https://www.cas.cn/zjs/201702/t20170213_4590326.shtml.